RNA-Seq of mus musculus adult male subchondral bone marrow B cells - SRA

SRX4546439: RNA-Seq of mus musculus adult male subchondral bone marrow B cells
1 ILLUMINA (Illumina HiSeq 2500) run: 44.1M spots, 4.4G bases, 1.3Gb downloads

Design: Sequenced reads were cleaned according to a rigorous pre-processing workflow (Trimmomatic-0.32) before mapping them to the Mus musculus genome (mm10) with SHRiMP2.2.3 ( http://compbio.cs.toronto.edu/shrimp/ ). Cufflinks2.0.2 (cuffdiff2 - Running Cuffdiff) were then used to perform differential expression analysis with an FDR cutoff of 0.05 (95% confidence interval).

Submitted by: University of Rochester Medical Center

Study: RA B cell sequencing

PRJNA485540 • SRP157127 • All experiments • All runs

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RNA-seq was performed using purified B cells isolated from bone marrow of TNF-transgenic mice (line 3647) and WT littermates, and B cells isolated from the subchondral bone marrow of TNF-transgenic mice to compare their transcriptome profiles.

Sample: C1

SAMN09809399 • SRS3663962 • All experiments • All runs

Organism: Mus musculus

Library:

Name: TNF-JB2

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: PolyA

Layout: SINGLE

Runs: 1 run, 44.1M spots, 4.4G bases, 1.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR7685939	44,074,565	4.4G	1.3Gb	2018-11-01

ID:: 6151276

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